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Argon in PDB 6q8r: Hew Lysozyme Under 2 Kbar of Argon

Enzymatic activity of Hew Lysozyme Under 2 Kbar of Argon

All present enzymatic activity of Hew Lysozyme Under 2 Kbar of Argon:
3.2.1.17;

Protein crystallography data

The structure of Hew Lysozyme Under 2 Kbar of Argon, PDB code: 6q8r was solved by T.Prange, P.Carpentier, N.Colloc'h, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.95 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.830, 77.830, 37.990, 90.00, 90.00, 90.00
R / Rfree (%) 15.3 / 18.8

Other elements in 6q8r:

The structure of Hew Lysozyme Under 2 Kbar of Argon also contains other interesting chemical elements:

Chlorine (Cl) 12 atoms
Sodium (Na) 1 atom

Argon Binding Sites:

The binding sites of Argon atom in the Hew Lysozyme Under 2 Kbar of Argon (pdb code 6q8r). This binding sites where shown within 5.0 Angstroms radius around Argon atom.
In total 8 binding sites of Argon where determined in the Hew Lysozyme Under 2 Kbar of Argon, PDB code: 6q8r:
Jump to Argon binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Argon binding site 1 out of 8 in 6q8r

Go back to Argon Binding Sites List in 6q8r
Argon binding site 1 out of 8 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 1 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar214

b:16.5
occ:1.00
 CG2 A:ILE55 3.5 11.8 1.0
CG2 A:VAL92 3.6 10.2 1.0
CD1 A:LEU56 3.6 10.2 1.0
CE A:MET12 3.8 10.2 1.0
CB A:SER91 3.8 9.9 1.0
CG A:LEU56 4.0 9.7 1.0
CD1 A:ILE88 4.0 10.8 1.0
N A:VAL92 4.0 8.7 1.0
CB A:ILE88 4.2 10.0 1.0
C A:SER91 4.2 8.9 1.0
CA A:VAL92 4.3 9.5 1.0
O A:ILE88 4.5 11.1 1.0
CG1 A:ILE88 4.6 9.8 1.0
CB A:VAL92 4.6 9.9 1.0
O A:SER91 4.6 8.7 1.0
CD1 A:LEU17 4.6 18.7 1.0
CG A:MET12 4.6 11.0 1.0
CA A:SER91 4.7 9.3 1.0
CG2 A:ILE88 4.7 11.6 1.0
CB A:LEU56 4.9 8.8 1.0
OG A:SER91 4.9 9.3 1.0
CB A:ILE55 5.0 9.7 1.0

Argon binding site 2 out of 8 in 6q8r

Go back to Argon Binding Sites List in 6q8r
Argon binding site 2 out of 8 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 2 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar215

b:14.8
occ:1.00
 OE1 A:GLN41 3.3 10.3 1.0
O A:GLN41 3.7 10.3 1.0
CB A:GLN41 3.7 9.3 1.0
CD1 A:LEU84 3.8 9.5 1.0
CG A:GLN41 3.9 8.7 1.0
CD A:GLN41 4.0 8.7 1.0
CA A:GLN41 4.1 8.4 1.0
C A:GLN41 4.3 8.9 1.0
CB A:LEU84 4.4 9.3 1.0
CG A:LEU84 4.5 10.1 1.0
CD2 A:LEU84 4.6 9.5 1.0
O A:HOH358 4.8 10.2 1.0

Argon binding site 3 out of 8 in 6q8r

Go back to Argon Binding Sites List in 6q8r
Argon binding site 3 out of 8 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 3 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar216

b:19.8
occ:0.60
 O A:HOH487 3.2 36.4 1.0
ND2 A:ASN74 3.3 12.7 1.0
O A:HOH440 3.8 24.6 1.0
CB A:ASN65 3.9 11.4 1.0
CB A:ASN74 3.9 12.5 1.0
CG A:ASN74 4.1 12.4 1.0
CG A:ASN65 4.1 12.8 1.0
O A:HOH427 4.5 12.5 1.0
OD1 A:ASN65 4.5 12.7 1.0
ND2 A:ASN65 4.6 16.5 1.0
AR A:AR217 4.8 20.0 0.6
O A:HOH464 4.9 32.9 1.0

Argon binding site 4 out of 8 in 6q8r

Go back to Argon Binding Sites List in 6q8r
Argon binding site 4 out of 8 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 4 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar217

b:20.0
occ:0.60
 O A:HOH452 2.9 27.0 1.0
CL A:CL206 3.2 25.7 1.0
ND2 A:ASN74 3.2 12.7 1.0
C A:ILE78 3.3 10.7 1.0
N A:ILE78 3.5 11.9 1.0
N A:PRO79 3.5 10.9 1.0
CA A:ILE78 3.5 10.9 1.0
C A:ASN77 3.6 14.1 1.0
O A:ILE78 3.7 10.1 1.0
O A:ASN77 3.7 12.9 1.0
CD A:PRO79 3.8 10.5 1.0
CG A:ASN74 4.4 12.4 1.0
CA A:PRO79 4.5 9.8 1.0
CA A:ASN77 4.5 15.9 1.0
OD1 A:ASN74 4.7 11.0 1.0
CB A:ASN65 4.8 11.4 1.0
AR A:AR216 4.8 19.8 0.6
CG A:PRO79 4.9 11.1 1.0
CB A:PRO79 4.9 9.8 1.0
O A:HOH450 4.9 42.7 1.0

Argon binding site 5 out of 8 in 6q8r

Go back to Argon Binding Sites List in 6q8r
Argon binding site 5 out of 8 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 5 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar218

b:16.9
occ:0.50
 O A:HOH474 2.7 27.4 1.0
OG A:SER81 2.9 9.4 1.0
O A:HOH499 2.9 28.5 1.0
N A:ALA82 3.5 9.1 1.0
C A:SER81 3.6 8.5 1.0
CA A:ALA82 3.7 9.9 1.0
CB A:SER81 3.7 8.7 1.0
O A:SER81 3.9 7.8 1.0
O A:HOH373 4.2 15.8 1.0
CB A:ALA82 4.3 11.4 1.0
CA A:SER81 4.3 8.7 1.0
CG A:PRO79 4.4 11.1 1.0
O A:HOH360 4.5 15.4 1.0

Argon binding site 6 out of 8 in 6q8r

Go back to Argon Binding Sites List in 6q8r
Argon binding site 6 out of 8 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 6 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar219

b:17.5
occ:0.50
 O A:HOH467 2.9 36.5 1.0
O A:HOH495 3.0 32.6 1.0
N A:VAL2 3.1 11.3 1.0
CL A:CL208 3.4 23.5 1.0
CA A:LYS1 3.7 11.5 1.0
O A:VAL2 3.8 11.0 1.0
C A:LYS1 3.9 11.1 1.0
CA A:VAL2 4.0 11.7 1.0
CB A:VAL2 4.1 11.8 1.0
CG A:LYS1 4.3 13.6 1.0
C A:VAL2 4.3 11.0 1.0
CB A:LYS1 4.5 12.3 1.0
O A:HOH480 4.5 39.9 1.0
O A:HOH322 4.5 33.6 1.0
CG2 A:VAL2 4.6 11.3 1.0
O A:HOH348 4.7 19.3 1.0
N A:LYS1 4.8 11.7 1.0

Argon binding site 7 out of 8 in 6q8r

Go back to Argon Binding Sites List in 6q8r
Argon binding site 7 out of 8 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 7 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar220

b:19.0
occ:0.40
 OXT A:ACT222 2.9 26.6 1.0
O A:HOH334 2.9 31.4 1.0
NE1 A:TRP63 3.2 10.6 1.0
C A:ACT222 3.7 23.7 1.0
CH3 A:ACT222 3.7 16.4 1.0
CD1 A:TRP62 3.8 20.3 1.0
CD1 A:TRP63 4.1 10.3 1.0
CE2 A:TRP63 4.2 11.5 1.0
O A:HOH312 4.3 40.1 1.0
NE1 A:TRP62 4.5 22.3 1.0
CZ2 A:TRP63 4.6 11.3 1.0
CG A:TRP62 4.6 18.7 1.0
O A:HOH306 4.6 23.8 1.0
O A:HOH444 4.7 38.8 1.0
O A:HOH374 4.8 35.7 0.5
O A:ACT222 4.9 28.0 1.0
CB A:TRP62 4.9 14.6 1.0
O A:HOH374 5.0 35.7 0.5
CB A:ASN59 5.0 13.3 1.0
O A:ALA107 5.0 11.3 1.0

Argon binding site 8 out of 8 in 6q8r

Go back to Argon Binding Sites List in 6q8r
Argon binding site 8 out of 8 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 8 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar221

b:18.3
occ:0.30
 O A:HOH499 2.7 28.5 1.0
O A:HOH501 2.9 37.7 1.0
O A:HOH450 3.0 42.7 1.0
O A:HOH493 3.3 34.2 1.0
CD A:PRO79 3.7 10.5 1.0
CB A:ALA82 3.8 11.4 1.0
CG A:PRO79 4.1 11.1 1.0
CG2 A:ILE78 4.2 11.7 1.0
CB A:ILE78 4.7 10.7 1.0
N A:PRO79 4.9 10.9 1.0
CA A:ILE78 4.9 10.9 1.0
O A:HOH452 5.0 27.0 1.0

Reference:

T.Prange, P.Carpentier. Labelling Protein Crystals By Argon at 2 Kbar To Be Published.
Page generated: Wed Jul 10 10:49:46 2024

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