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Argon in PDB 6qar: Thermolysine Under 2 Kbar of Argon

Enzymatic activity of Thermolysine Under 2 Kbar of Argon

All present enzymatic activity of Thermolysine Under 2 Kbar of Argon:
3.4.24.27;

Protein crystallography data

The structure of Thermolysine Under 2 Kbar of Argon, PDB code: 6qar was solved by T.Prange, P.Carpentier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.65 / 1.85
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.669, 92.669, 129.203, 90.00, 90.00, 120.00
R / Rfree (%) 15.9 / 19.6

Other elements in 6qar:

The structure of Thermolysine Under 2 Kbar of Argon also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Calcium (Ca) 4 atoms
Chlorine (Cl) 9 atoms

Argon Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Argon atom in the Thermolysine Under 2 Kbar of Argon (pdb code 6qar). This binding sites where shown within 5.0 Angstroms radius around Argon atom.
In total 20 binding sites of Argon where determined in the Thermolysine Under 2 Kbar of Argon, PDB code: 6qar:
Jump to Argon binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Argon binding site 1 out of 20 in 6qar

Go back to Argon Binding Sites List in 6qar
Argon binding site 1 out of 20 in the Thermolysine Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 1 of Thermolysine Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar508

b:34.0
occ:1.00
 C A:SER92 3.6 26.3 1.0
CD2 A:TYR84 3.6 24.3 1.0
N A:TYR93 3.6 23.6 1.0
CA A:SER92 3.8 24.9 1.0
CG A:LEU144 3.9 24.3 1.0
CA A:TYR93 4.0 26.2 1.0
O A:HOH1171 4.0 22.2 1.0
CD2 A:LEU144 4.0 21.7 1.0
O A:SER92 4.1 26.8 1.0
CG A:TYR84 4.1 22.9 1.0
CB A:TYR84 4.2 20.8 1.0
CB A:TYR93 4.3 23.7 1.0
CD1 A:LEU144 4.3 22.1 1.0
CE2 A:TYR84 4.3 21.4 1.0
CG2 A:VAL148 4.4 23.3 1.0
CA A:TYR81 4.4 18.1 1.0
CD1 A:ILE100 4.5 20.9 1.0
O A:THR80 4.6 18.0 1.0
N A:SER92 4.6 22.4 1.0
OG A:SER92 4.7 21.4 1.0
N A:TYR81 4.7 16.1 1.0
CG2 A:THR80 4.7 17.1 1.0
C A:THR80 4.8 18.2 1.0
CB A:SER92 4.9 22.7 1.0

Argon binding site 2 out of 20 in 6qar

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Argon binding site 2 out of 20 in the Thermolysine Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 2 of Thermolysine Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar509

b:36.5
occ:1.00
 O A:ALA98 3.1 21.4 1.0
O A:ARG35 3.1 22.1 1.0
O A:GLY38 3.4 19.8 1.0
CE2 A:TYR81 3.7 22.1 1.0
OG A:SER92 3.7 21.4 1.0
CD2 A:TYR81 3.7 21.7 1.0
CD1 A:ILE100 3.8 20.9 1.0
C A:ARG35 3.8 20.4 1.0
N A:GLY38 3.8 25.8 1.0
CA A:GLY36 3.9 23.8 1.0
CG1 A:ILE100 4.0 23.6 1.0
C A:GLY38 4.0 22.2 1.0
N A:ASN37 4.0 20.0 1.0
CB A:SER92 4.0 22.7 1.0
C A:ALA98 4.1 22.9 1.0
N A:ILE100 4.1 22.0 1.0
O A:ASN97 4.1 20.9 1.0
N A:GLY36 4.2 24.0 1.0
CG1 A:ILE39 4.2 22.4 1.0
C A:GLY36 4.2 21.1 1.0
CA A:ALA99 4.3 21.7 1.0
CA A:GLY38 4.5 22.5 1.0
C A:ALA99 4.5 23.0 1.0
C A:ASN97 4.5 24.1 1.0
CB A:ILE100 4.6 20.1 1.0
N A:ALA99 4.6 21.8 1.0
CB A:ARG35 4.6 20.9 1.0
C A:ASN37 4.7 24.6 1.0
CZ A:TYR81 4.8 23.2 1.0
N A:ILE39 4.8 19.9 1.0
CG A:TYR81 4.8 18.4 1.0
OD1 A:ASN97 4.8 24.9 1.0
CA A:ARG35 4.9 21.2 1.0
CA A:ASN37 4.9 21.9 1.0
CD1 A:ILE39 4.9 23.1 1.0

Argon binding site 3 out of 20 in 6qar

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Argon binding site 3 out of 20 in the Thermolysine Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 3 of Thermolysine Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar510

b:33.9
occ:1.00
 CE2 A:PHE281 3.5 23.7 1.0
CG A:ASN233 3.6 23.3 1.0
CB A:ARG220 3.6 26.9 1.0
ND2 A:ASN233 3.7 21.0 1.0
CB A:ASN233 3.7 20.0 1.0
CG A:GLU160 3.7 21.9 1.0
CZ A:PHE281 3.7 23.1 1.0
CD A:ARG220 3.8 31.7 1.0
OE2 A:GLU160 3.9 21.2 1.0
CE1 A:TYR217 3.9 26.3 1.0
CD A:GLU160 4.0 23.3 1.0
OD1 A:ASN233 4.1 21.9 1.0
CD2 A:PHE281 4.1 23.0 1.0
CG A:ARG220 4.3 26.8 1.0
CD1 A:ILE236 4.3 18.9 1.0
CD1 A:TYR217 4.4 24.6 1.0
CE1 A:PHE281 4.5 22.6 1.0
CG A:PHE281 4.8 22.8 1.0
CB A:GLU160 4.8 20.8 1.0
CA A:ARG220 4.8 23.8 1.0
OE1 A:GLU160 4.9 22.6 1.0
CZ A:TYR217 4.9 26.2 1.0
CD1 A:PHE281 4.9 22.5 1.0
O A:HOH1124 5.0 26.2 1.0
CA A:GLU160 5.0 19.7 1.0
CA A:ASN233 5.0 20.1 1.0

Argon binding site 4 out of 20 in 6qar

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Argon binding site 4 out of 20 in the Thermolysine Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 4 of Thermolysine Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar511

b:35.7
occ:1.00
 O A:HOH1266 3.0 26.8 1.0
N A:ALA58 3.0 16.6 1.0
AR A:AR527 3.3 34.1 0.2
CA A:ASP57 3.6 18.7 1.0
CB A:ALA58 3.7 17.1 1.0
C A:ASP57 3.8 19.1 1.0
OD1 A:ASP57 3.9 22.1 1.0
CA A:ALA58 4.0 17.6 1.0
O A:HOH1308 4.1 34.9 1.0
CG A:ASP57 4.2 22.6 1.0
O A:ALA56 4.4 20.4 1.0
CB A:ASP57 4.5 19.1 1.0
N A:ASP57 4.7 18.7 1.0
CA A:CA505 4.7 19.2 1.0
O A:HOH1118 4.7 20.1 1.0
OD2 A:ASP57 4.7 19.3 1.0
C A:ALA56 4.9 17.9 1.0
CE2 A:TYR27 5.0 21.3 1.0

Argon binding site 5 out of 20 in 6qar

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Argon binding site 5 out of 20 in the Thermolysine Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 5 of Thermolysine Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar512

b:37.2
occ:0.90
 O A:HOH1154 3.5 39.7 1.0
AR A:AR527 3.6 34.1 0.2
CZ A:TYR27 3.6 23.0 1.0
OH A:TYR27 3.8 23.4 1.0
CE1 A:TYR27 3.8 23.5 1.0
CB A:ALA56 3.9 19.5 1.0
CE2 A:TYR27 4.0 21.3 1.0
AR A:AR521 4.3 31.5 0.8
CD1 A:TYR27 4.3 24.2 1.0
CD2 A:TYR27 4.4 21.9 1.0
CG A:TYR27 4.6 19.6 1.0

Argon binding site 6 out of 20 in 6qar

Go back to Argon Binding Sites List in 6qar
Argon binding site 6 out of 20 in the Thermolysine Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 6 of Thermolysine Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar513

b:32.6
occ:0.90
 O A:TYR193 3.3 20.2 1.0
C A:VAL192 3.3 16.8 1.0
O A:ASP191 3.4 19.7 1.0
CA A:PRO195 3.5 29.7 1.0
N A:TYR193 3.5 20.2 1.0
O A:HOH1158 3.6 33.6 1.0
O A:HOH1236 3.6 30.6 1.0
CA A:VAL192 3.6 18.2 1.0
O A:VAL192 3.6 19.6 1.0
N A:PRO195 3.6 25.1 1.0
C A:TYR193 3.8 22.8 1.0
CB A:PRO195 3.8 26.1 1.0
C A:ASP191 3.9 22.4 1.0
CD1 A:ILE131 3.9 21.8 1.0
N A:VAL192 4.0 18.9 1.0
C A:THR194 4.0 25.9 1.0
CG1 A:ILE131 4.0 17.9 1.0
CD A:PRO195 4.1 29.9 1.0
O A:THR194 4.2 30.0 1.0
CA A:TYR193 4.2 20.9 1.0
N A:THR194 4.4 22.6 1.0
CG2 A:ILE131 4.4 19.8 1.0
O A:GLU190 4.4 20.0 1.0
CG A:PRO195 4.5 26.0 1.0
CA A:CA506 4.7 24.1 1.0
CB A:ILE131 4.8 20.2 1.0
CA A:THR194 4.9 23.8 1.0
C A:PRO195 4.9 28.3 1.0
CB A:VAL192 5.0 19.3 1.0

Argon binding site 7 out of 20 in 6qar

Go back to Argon Binding Sites List in 6qar
Argon binding site 7 out of 20 in the Thermolysine Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 7 of Thermolysine Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar514

b:44.9
occ:0.80
 O A:HOH1249 3.0 35.1 1.0
N A:ARG260 3.2 25.0 1.0
CZ A:ARG260 3.6 43.8 1.0
CA A:GLY259 3.7 24.7 1.0
NH2 A:ARG260 3.7 48.3 1.0
CB A:ARG260 3.9 23.8 1.0
NE A:ARG260 3.9 39.4 1.0
NH1 A:ARG260 3.9 49.0 1.0
C A:GLY259 3.9 25.5 1.0
CG A:ARG260 4.1 28.5 1.0
CA A:ARG260 4.1 24.5 1.0
CD A:ARG260 4.5 31.5 1.0
OE1 A:GLN246 4.7 34.7 1.0
N A:ASP261 4.9 24.2 1.0
OG A:SER245 4.9 24.4 1.0

Argon binding site 8 out of 20 in 6qar

Go back to Argon Binding Sites List in 6qar
Argon binding site 8 out of 20 in the Thermolysine Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 8 of Thermolysine Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar515

b:33.1
occ:0.80
 N A:GLY252 3.1 26.2 1.0
O A:THR249 3.4 28.7 1.0
CG2 A:THR249 3.5 24.6 1.0
N A:TYR251 3.6 21.8 1.0
C A:THR249 3.7 26.3 1.0
CA A:GLY252 3.9 29.4 1.0
N A:HIS250 3.9 25.1 1.0
CA A:TYR251 4.1 27.4 1.0
C A:HIS250 4.1 23.4 1.0
C A:TYR251 4.1 26.8 1.0
CA A:HIS250 4.1 23.3 1.0
CB A:THR249 4.1 23.2 1.0
CA A:THR249 4.5 24.3 1.0
O A:HIS250 4.9 25.6 1.0
C A:GLY252 4.9 31.1 1.0
O A:HOH1224 5.0 25.7 1.0

Argon binding site 9 out of 20 in 6qar

Go back to Argon Binding Sites List in 6qar
Argon binding site 9 out of 20 in the Thermolysine Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 9 of Thermolysine Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar516

b:38.8
occ:0.80
 N A:ASN19 3.2 21.1 1.0
CA A:LYS18 3.7 20.6 1.0
CB A:LYS18 3.9 20.1 1.0
OH A:TYR75 3.9 38.0 1.0
C A:LYS18 4.0 22.3 1.0
CB A:ASN19 4.0 25.4 1.0
CA A:ASN19 4.2 23.1 1.0
CE1 A:TYR75 4.2 30.1 1.0
CG A:ASN19 4.3 28.3 1.0
ND2 A:ASN19 4.3 32.7 1.0
O A:HOH1264 4.4 39.7 1.0
O A:ASN19 4.4 21.5 1.0
CZ A:TYR75 4.5 31.5 1.0
C A:ASN19 4.8 23.1 1.0
O A:GLN17 4.9 22.7 1.0

Argon binding site 10 out of 20 in 6qar

Go back to Argon Binding Sites List in 6qar
Argon binding site 10 out of 20 in the Thermolysine Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 10 of Thermolysine Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar517

b:40.8
occ:0.80
 O A:HOH1247 3.0 47.2 1.0
ND2 A:ASN97 3.5 24.8 1.0
CE A:LYS85 3.6 39.1 1.0
OH A:TYR81 3.8 26.7 1.0
CD2 A:LEU91 3.9 30.6 1.0
CG A:ASN97 4.4 25.7 1.0
O A:HOH1239 4.5 44.3 1.0
OD1 A:ASN97 4.5 24.9 1.0
CD1 A:LEU91 4.6 31.6 1.0
CD A:LYS85 4.6 34.1 1.0
NZ A:LYS85 4.7 44.0 1.0
CG A:LEU91 4.8 26.9 1.0
O A:HOH1285 4.9 35.3 1.0

Reference:

T.Prange, P.Carpentier. Labelling Protein Crystals By Argon at 2 Kbar To Be Published.
Page generated: Wed Jul 10 10:50:04 2024

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