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Argon in PDB 6r1q: Murine Neuroglobin Under 2 Kbar of Argon

Protein crystallography data

The structure of Murine Neuroglobin Under 2 Kbar of Argon, PDB code: 6r1q was solved by T.Prange, N.Colloc'h, P.Carpentier, B.Vallone, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.01 / 1.95
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 87.951, 87.951, 112.923, 90.00, 90.00, 120.00
R / Rfree (%) 19.4 / 25.9

Other elements in 6r1q:

The structure of Murine Neuroglobin Under 2 Kbar of Argon also contains other interesting chemical elements:

Iron (Fe) 1 atom
Chlorine (Cl) 1 atom

Argon Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Argon atom in the Murine Neuroglobin Under 2 Kbar of Argon (pdb code 6r1q). This binding sites where shown within 5.0 Angstroms radius around Argon atom.
In total 15 binding sites of Argon where determined in the Murine Neuroglobin Under 2 Kbar of Argon, PDB code: 6r1q:
Jump to Argon binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Argon binding site 1 out of 15 in 6r1q

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Argon binding site 1 out of 15 in the Murine Neuroglobin Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 1 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar203

b:26.9
occ:1.00
 OG A:SER55 3.5 18.7 1.0
CD2 A:PHE32 3.6 20.9 1.0
N A:ALA29 3.6 18.7 1.0
CD2 A:LEU56 3.6 29.0 1.0
CG A:LEU56 3.7 23.6 1.0
CA A:ALA29 3.7 21.5 1.0
C A:PHE28 3.8 17.6 1.0
CE2 A:PHE32 3.9 19.2 1.0
O A:PHE28 3.9 19.7 1.0
O A:HOH393 3.9 31.8 1.0
O A:PRO52 3.9 29.6 1.0
CD1 A:LEU56 4.0 24.4 1.0
CB A:PHE28 4.0 20.1 1.0
CE2 A:PHE61 4.2 20.2 1.0
CB A:ALA29 4.2 20.2 1.0
CZ A:PHE61 4.4 22.0 1.0
CA A:PHE28 4.5 18.8 1.0
C A:PRO52 4.7 28.5 1.0
CB A:PRO52 4.7 27.6 1.0
CG A:PHE32 4.7 18.9 1.0
O A:THR25 4.7 19.0 1.0
CB A:SER55 4.8 19.3 1.0
CA A:PRO52 4.9 27.9 1.0

Argon binding site 2 out of 15 in 6r1q

Go back to Argon Binding Sites List in 6r1q
Argon binding site 2 out of 15 in the Murine Neuroglobin Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 2 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar204

b:36.8
occ:1.00
 CZ A:PHE28 3.3 30.1 1.0
CMC A:HEM202 3.7 32.9 1.0
CG1 A:VAL109 3.7 24.7 1.0
CE2 A:PHE28 3.7 29.9 1.0
CD2 A:LEU27 3.7 21.0 1.0
CHC A:HEM202 3.9 24.7 1.0
CE1 A:PHE28 4.0 30.7 1.0
CD2 A:LEU31 4.0 25.5 1.0
CG2 A:VAL109 4.1 25.1 1.0
C2C A:HEM202 4.1 28.6 1.0
C1C A:HEM202 4.2 26.1 1.0
CAB A:HEM202 4.3 29.0 1.0
AR A:AR207 4.3 32.9 0.8
CG2 A:VAL68 4.4 28.2 1.0
CG1 A:VAL68 4.4 30.7 1.0
CB A:VAL109 4.5 23.5 1.0
C4B A:HEM202 4.6 24.1 1.0
CD2 A:PHE28 4.6 27.8 1.0
C3B A:HEM202 4.8 25.1 1.0
CD1 A:PHE28 4.9 25.7 1.0
CB A:VAL68 5.0 26.9 1.0
AR A:AR206 5.0 40.4 1.0

Argon binding site 3 out of 15 in 6r1q

Go back to Argon Binding Sites List in 6r1q
Argon binding site 3 out of 15 in the Murine Neuroglobin Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 3 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar205

b:36.5
occ:1.00
 AR A:AR208 3.8 40.7 0.7
CG A:LEU136 3.8 36.9 1.0
CA A:TYR137 3.9 26.7 1.0
CD2 A:LEU113 4.0 25.4 1.0
CZ3 A:TRP133 4.0 25.7 1.0
N A:TYR137 4.0 33.7 1.0
CG2 A:VAL140 4.1 29.3 1.0
CD2 A:LEU136 4.2 38.6 1.0
CB A:TYR137 4.2 28.6 1.0
CE3 A:TRP133 4.2 27.2 1.0
CG2 A:ILE72 4.2 28.9 1.0
CD1 A:TYR137 4.2 29.2 1.0
C A:LEU136 4.4 31.8 1.0
CB A:ALA75 4.5 35.2 1.0
CB A:LEU136 4.6 36.0 1.0
O A:LEU136 4.7 40.2 1.0
CG A:TYR137 4.8 30.0 1.0
CD1 A:LEU136 4.8 40.0 1.0
CG1 A:ILE72 4.8 28.4 1.0
CB A:VAL140 4.9 33.5 1.0
CB A:ILE72 5.0 27.6 1.0

Argon binding site 4 out of 15 in 6r1q

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Argon binding site 4 out of 15 in the Murine Neuroglobin Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 4 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar206

b:40.4
occ:1.00
 CG1 A:VAL68 3.5 30.7 1.0
CE2 A:PHE28 3.5 29.9 1.0
CB A:VAL68 3.6 26.9 1.0
CA A:GLY24 3.6 20.2 1.0
CD2 A:PHE28 3.6 27.8 1.0
O A:GLY24 3.8 19.5 1.0
SD A:MET69 3.9 26.2 1.0
CG2 A:ILE65 3.9 22.8 1.0
CD1 A:LEU27 4.0 24.6 1.0
O A:ILE65 4.0 21.5 1.0
CG A:MET69 4.0 24.2 1.0
CB A:LEU27 4.1 20.8 1.0
C A:GLY24 4.1 19.2 1.0
CD2 A:LEU27 4.2 21.0 1.0
CG2 A:VAL68 4.2 28.2 1.0
CG A:LEU27 4.3 22.4 1.0
CA A:ILE65 4.4 23.6 1.0
N A:MET69 4.7 22.6 1.0
CB A:ILE65 4.7 21.0 1.0
C A:ILE65 4.7 24.2 1.0
CZ A:PHE28 4.7 30.1 1.0
CA A:VAL68 4.8 23.3 1.0
N A:GLY24 4.9 20.4 1.0
CG1 A:ILE65 4.9 22.3 1.0
CG A:PHE28 4.9 21.6 1.0
AR A:AR204 5.0 36.8 1.0

Argon binding site 5 out of 15 in 6r1q

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Argon binding site 5 out of 15 in the Murine Neuroglobin Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 5 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar207

b:32.9
occ:0.75
 CG1 A:VAL109 3.5 24.7 1.0
AR A:AR208 3.7 40.7 0.7
CD1 A:ILE72 3.7 32.3 1.0
CG1 A:VAL68 3.9 30.7 1.0
CD1 A:LEU27 4.0 24.6 1.0
CMC A:HEM202 4.1 32.9 1.0
CD2 A:LEU113 4.2 25.4 1.0
CB A:LEU113 4.2 23.6 1.0
AR A:AR204 4.3 36.8 1.0
CG1 A:ILE72 4.3 28.4 1.0
CE1 A:TYR137 4.4 28.3 1.0
CBC A:HEM202 4.6 36.5 1.0
CG A:LEU113 4.6 23.0 1.0
O A:VAL109 4.8 21.0 1.0
CD1 A:LEU113 4.8 27.5 1.0
CD2 A:LEU27 4.8 21.0 1.0
CD1 A:TYR137 4.9 29.2 1.0
CB A:VAL109 5.0 23.5 1.0

Argon binding site 6 out of 15 in 6r1q

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Argon binding site 6 out of 15 in the Murine Neuroglobin Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 6 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar208

b:40.7
occ:0.65
 CBC A:HEM202 3.4 36.5 1.0
AR A:AR207 3.7 32.9 0.8
CG1 A:ILE72 3.7 28.4 1.0
AR A:AR215 3.7 32.7 0.3
CG1 A:VAL140 3.8 35.5 1.0
AR A:AR205 3.8 36.5 1.0
CD1 A:TYR137 4.1 29.2 1.0
CE1 A:TYR137 4.1 28.3 1.0
CB A:VAL140 4.4 33.5 1.0
CG2 A:VAL140 4.5 29.3 1.0
CD1 A:ILE72 4.5 32.3 1.0
CAC A:HEM202 4.7 26.9 1.0
CB A:ILE72 4.8 27.6 1.0
CMC A:HEM202 4.8 32.9 1.0
CA A:ILE72 4.9 25.4 1.0
CG1 A:VAL71 4.9 31.9 1.0

Argon binding site 7 out of 15 in 6r1q

Go back to Argon Binding Sites List in 6r1q
Argon binding site 7 out of 15 in the Murine Neuroglobin Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 7 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar209

b:30.9
occ:0.50
 CB A:TYR137 3.2 28.6 1.0
CD2 A:LEU114 3.5 26.6 1.0
O A:GLY110 3.5 21.9 1.0
CG A:TYR137 3.6 30.0 1.0
CG A:LEU114 3.6 27.8 1.0
O A:TRP133 3.7 29.2 1.0
CA A:SER134 4.0 31.2 1.0
CD2 A:TYR137 4.0 28.1 1.0
C A:TRP133 4.0 28.6 1.0
CD2 A:LEU113 4.0 25.4 1.0
CA A:GLY110 4.1 22.4 1.0
CD1 A:LEU114 4.1 31.9 1.0
N A:SER134 4.1 32.1 1.0
C A:GLY110 4.2 21.4 1.0
CD1 A:TYR137 4.4 29.2 1.0
CG A:LEU113 4.4 23.0 1.0
CB A:TRP133 4.5 28.7 1.0
CB A:LEU113 4.6 23.6 1.0
CA A:TYR137 4.7 26.7 1.0
N A:LEU114 4.8 23.3 1.0
OG A:SER134 4.8 53.3 1.0
CB A:SER134 4.8 37.0 1.0
CB A:LEU114 4.9 25.8 1.0
C A:SER134 4.9 32.9 1.0
CA A:TRP133 4.9 32.4 1.0
CE2 A:TYR137 4.9 27.0 1.0
O A:SER134 5.0 32.3 1.0

Argon binding site 8 out of 15 in 6r1q

Go back to Argon Binding Sites List in 6r1q
Argon binding site 8 out of 15 in the Murine Neuroglobin Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 8 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar210

b:36.6
occ:0.50
 O A:LYS67 3.7 29.7 1.0
CB A:LEU70 3.7 39.5 1.0
AR A:AR212 3.8 38.2 0.4
CA A:LYS67 3.9 27.3 1.0
CMD A:HEM202 4.0 26.4 1.0
CD2 A:LEU70 4.1 67.4 1.0
CG2 A:VAL71 4.1 33.6 1.0
CB A:LYS67 4.2 28.8 1.0
C A:LYS67 4.2 30.8 1.0
CG A:LEU70 4.3 58.5 1.0
OH A:TYR88 4.4 39.2 1.0
O A:HOH314 4.5 48.4 1.0
CG A:LYS67 4.5 31.7 1.0
N A:VAL71 4.6 26.8 1.0
CA A:LEU70 4.9 32.4 1.0
C A:LEU70 4.9 30.0 1.0

Argon binding site 9 out of 15 in 6r1q

Go back to Argon Binding Sites List in 6r1q
Argon binding site 9 out of 15 in the Murine Neuroglobin Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 9 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar211

b:39.1
occ:0.50
 CG A:LYS95 2.7 56.3 1.0
O A:LYS95 3.2 34.7 1.0
C A:LYS95 3.3 35.0 1.0
CG1 A:VAL99 3.4 61.0 1.0
C1A A:HEM202 3.4 23.6 1.0
CB A:LYS95 3.4 43.3 1.0
C2A A:HEM202 3.5 26.6 1.0
N A:HIS96 3.6 34.1 1.0
CG A:HIS96 3.6 32.9 1.0
CD2 A:HIS96 3.6 31.2 1.0
NZ A:LYS95 3.6 65.7 1.0
ND1 A:HIS96 3.7 29.7 1.0
NE2 A:HIS96 3.7 28.3 1.0
CHA A:HEM202 3.7 24.0 1.0
CE1 A:HIS96 3.8 29.1 1.0
CA A:HIS96 3.8 39.5 1.0
NA A:HEM202 3.8 22.9 1.0
CG2 A:VAL99 3.9 54.4 1.0
CD A:LYS95 3.9 62.6 1.0
C3A A:HEM202 3.9 25.0 1.0
CA A:LYS95 4.0 45.1 1.0
CAA A:HEM202 4.0 27.4 1.0
CE A:LYS95 4.1 65.4 1.0
C4A A:HEM202 4.1 25.7 1.0
CB A:VAL99 4.3 55.8 1.0
CB A:HIS96 4.3 34.9 1.0
C4D A:HEM202 4.4 25.4 1.0
CMA A:HEM202 4.8 28.7 1.0
FE A:HEM202 4.9 26.0 1.0
ND A:HEM202 4.9 24.3 1.0
O A:LEU92 5.0 36.1 1.0

Argon binding site 10 out of 15 in 6r1q

Go back to Argon Binding Sites List in 6r1q
Argon binding site 10 out of 15 in the Murine Neuroglobin Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 10 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar212

b:38.2
occ:0.40
 AR A:AR210 3.8 36.6 0.5
CG2 A:VAL71 3.9 33.6 1.0
CA A:VAL71 4.0 29.4 1.0
O A:LEU70 4.1 34.0 1.0
N A:VAL71 4.1 26.8 1.0
C A:LEU70 4.2 30.0 1.0
CB A:ALA74 4.2 32.7 1.0
OH A:TYR88 4.2 39.2 1.0
O A:HOH343 4.2 36.5 1.0
CE2 A:TYR88 4.3 46.0 1.0
CZ A:TYR88 4.4 46.5 1.0
CB A:VAL71 4.5 28.9 1.0
CB A:LEU70 4.8 39.5 1.0

Reference:

T.Prange, N.Colloc'h, P.Carpentier, P.Van Linden. Argon-Labelling Protein Crystals By High Pressure Cooling at 2000 Bar To Be Published.
Page generated: Wed Jul 10 10:50:05 2024

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