Argon in PDB 6r1q: Murine Neuroglobin Under 2 Kbar of Argon
Protein crystallography data
The structure of Murine Neuroglobin Under 2 Kbar of Argon, PDB code: 6r1q
was solved by
T.Prange,
N.Colloc'h,
P.Carpentier,
B.Vallone,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
44.01 /
1.95
|
Space group
|
H 3 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
87.951,
87.951,
112.923,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.4 /
25.9
|
Other elements in 6r1q:
The structure of Murine Neuroglobin Under 2 Kbar of Argon also contains other interesting chemical elements:
Argon Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
15;
Binding sites:
The binding sites of Argon atom in the Murine Neuroglobin Under 2 Kbar of Argon
(pdb code 6r1q). This binding sites where shown within
5.0 Angstroms radius around Argon atom.
In total 15 binding sites of Argon where determined in the
Murine Neuroglobin Under 2 Kbar of Argon, PDB code: 6r1q:
Jump to Argon binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Argon binding site 1 out
of 15 in 6r1q
Go back to
Argon Binding Sites List in 6r1q
Argon binding site 1 out
of 15 in the Murine Neuroglobin Under 2 Kbar of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 1 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ar203
b:26.9
occ:1.00
|
OG
|
A:SER55
|
3.5
|
18.7
|
1.0
|
CD2
|
A:PHE32
|
3.6
|
20.9
|
1.0
|
N
|
A:ALA29
|
3.6
|
18.7
|
1.0
|
CD2
|
A:LEU56
|
3.6
|
29.0
|
1.0
|
CG
|
A:LEU56
|
3.7
|
23.6
|
1.0
|
CA
|
A:ALA29
|
3.7
|
21.5
|
1.0
|
C
|
A:PHE28
|
3.8
|
17.6
|
1.0
|
CE2
|
A:PHE32
|
3.9
|
19.2
|
1.0
|
O
|
A:PHE28
|
3.9
|
19.7
|
1.0
|
O
|
A:HOH393
|
3.9
|
31.8
|
1.0
|
O
|
A:PRO52
|
3.9
|
29.6
|
1.0
|
CD1
|
A:LEU56
|
4.0
|
24.4
|
1.0
|
CB
|
A:PHE28
|
4.0
|
20.1
|
1.0
|
CE2
|
A:PHE61
|
4.2
|
20.2
|
1.0
|
CB
|
A:ALA29
|
4.2
|
20.2
|
1.0
|
CZ
|
A:PHE61
|
4.4
|
22.0
|
1.0
|
CA
|
A:PHE28
|
4.5
|
18.8
|
1.0
|
C
|
A:PRO52
|
4.7
|
28.5
|
1.0
|
CB
|
A:PRO52
|
4.7
|
27.6
|
1.0
|
CG
|
A:PHE32
|
4.7
|
18.9
|
1.0
|
O
|
A:THR25
|
4.7
|
19.0
|
1.0
|
CB
|
A:SER55
|
4.8
|
19.3
|
1.0
|
CA
|
A:PRO52
|
4.9
|
27.9
|
1.0
|
|
Argon binding site 2 out
of 15 in 6r1q
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Argon Binding Sites List in 6r1q
Argon binding site 2 out
of 15 in the Murine Neuroglobin Under 2 Kbar of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 2 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ar204
b:36.8
occ:1.00
|
CZ
|
A:PHE28
|
3.3
|
30.1
|
1.0
|
CMC
|
A:HEM202
|
3.7
|
32.9
|
1.0
|
CG1
|
A:VAL109
|
3.7
|
24.7
|
1.0
|
CE2
|
A:PHE28
|
3.7
|
29.9
|
1.0
|
CD2
|
A:LEU27
|
3.7
|
21.0
|
1.0
|
CHC
|
A:HEM202
|
3.9
|
24.7
|
1.0
|
CE1
|
A:PHE28
|
4.0
|
30.7
|
1.0
|
CD2
|
A:LEU31
|
4.0
|
25.5
|
1.0
|
CG2
|
A:VAL109
|
4.1
|
25.1
|
1.0
|
C2C
|
A:HEM202
|
4.1
|
28.6
|
1.0
|
C1C
|
A:HEM202
|
4.2
|
26.1
|
1.0
|
CAB
|
A:HEM202
|
4.3
|
29.0
|
1.0
|
AR
|
A:AR207
|
4.3
|
32.9
|
0.8
|
CG2
|
A:VAL68
|
4.4
|
28.2
|
1.0
|
CG1
|
A:VAL68
|
4.4
|
30.7
|
1.0
|
CB
|
A:VAL109
|
4.5
|
23.5
|
1.0
|
C4B
|
A:HEM202
|
4.6
|
24.1
|
1.0
|
CD2
|
A:PHE28
|
4.6
|
27.8
|
1.0
|
C3B
|
A:HEM202
|
4.8
|
25.1
|
1.0
|
CD1
|
A:PHE28
|
4.9
|
25.7
|
1.0
|
CB
|
A:VAL68
|
5.0
|
26.9
|
1.0
|
AR
|
A:AR206
|
5.0
|
40.4
|
1.0
|
|
Argon binding site 3 out
of 15 in 6r1q
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Argon Binding Sites List in 6r1q
Argon binding site 3 out
of 15 in the Murine Neuroglobin Under 2 Kbar of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 3 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ar205
b:36.5
occ:1.00
|
AR
|
A:AR208
|
3.8
|
40.7
|
0.7
|
CG
|
A:LEU136
|
3.8
|
36.9
|
1.0
|
CA
|
A:TYR137
|
3.9
|
26.7
|
1.0
|
CD2
|
A:LEU113
|
4.0
|
25.4
|
1.0
|
CZ3
|
A:TRP133
|
4.0
|
25.7
|
1.0
|
N
|
A:TYR137
|
4.0
|
33.7
|
1.0
|
CG2
|
A:VAL140
|
4.1
|
29.3
|
1.0
|
CD2
|
A:LEU136
|
4.2
|
38.6
|
1.0
|
CB
|
A:TYR137
|
4.2
|
28.6
|
1.0
|
CE3
|
A:TRP133
|
4.2
|
27.2
|
1.0
|
CG2
|
A:ILE72
|
4.2
|
28.9
|
1.0
|
CD1
|
A:TYR137
|
4.2
|
29.2
|
1.0
|
C
|
A:LEU136
|
4.4
|
31.8
|
1.0
|
CB
|
A:ALA75
|
4.5
|
35.2
|
1.0
|
CB
|
A:LEU136
|
4.6
|
36.0
|
1.0
|
O
|
A:LEU136
|
4.7
|
40.2
|
1.0
|
CG
|
A:TYR137
|
4.8
|
30.0
|
1.0
|
CD1
|
A:LEU136
|
4.8
|
40.0
|
1.0
|
CG1
|
A:ILE72
|
4.8
|
28.4
|
1.0
|
CB
|
A:VAL140
|
4.9
|
33.5
|
1.0
|
CB
|
A:ILE72
|
5.0
|
27.6
|
1.0
|
|
Argon binding site 4 out
of 15 in 6r1q
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Argon Binding Sites List in 6r1q
Argon binding site 4 out
of 15 in the Murine Neuroglobin Under 2 Kbar of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 4 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ar206
b:40.4
occ:1.00
|
CG1
|
A:VAL68
|
3.5
|
30.7
|
1.0
|
CE2
|
A:PHE28
|
3.5
|
29.9
|
1.0
|
CB
|
A:VAL68
|
3.6
|
26.9
|
1.0
|
CA
|
A:GLY24
|
3.6
|
20.2
|
1.0
|
CD2
|
A:PHE28
|
3.6
|
27.8
|
1.0
|
O
|
A:GLY24
|
3.8
|
19.5
|
1.0
|
SD
|
A:MET69
|
3.9
|
26.2
|
1.0
|
CG2
|
A:ILE65
|
3.9
|
22.8
|
1.0
|
CD1
|
A:LEU27
|
4.0
|
24.6
|
1.0
|
O
|
A:ILE65
|
4.0
|
21.5
|
1.0
|
CG
|
A:MET69
|
4.0
|
24.2
|
1.0
|
CB
|
A:LEU27
|
4.1
|
20.8
|
1.0
|
C
|
A:GLY24
|
4.1
|
19.2
|
1.0
|
CD2
|
A:LEU27
|
4.2
|
21.0
|
1.0
|
CG2
|
A:VAL68
|
4.2
|
28.2
|
1.0
|
CG
|
A:LEU27
|
4.3
|
22.4
|
1.0
|
CA
|
A:ILE65
|
4.4
|
23.6
|
1.0
|
N
|
A:MET69
|
4.7
|
22.6
|
1.0
|
CB
|
A:ILE65
|
4.7
|
21.0
|
1.0
|
C
|
A:ILE65
|
4.7
|
24.2
|
1.0
|
CZ
|
A:PHE28
|
4.7
|
30.1
|
1.0
|
CA
|
A:VAL68
|
4.8
|
23.3
|
1.0
|
N
|
A:GLY24
|
4.9
|
20.4
|
1.0
|
CG1
|
A:ILE65
|
4.9
|
22.3
|
1.0
|
CG
|
A:PHE28
|
4.9
|
21.6
|
1.0
|
AR
|
A:AR204
|
5.0
|
36.8
|
1.0
|
|
Argon binding site 5 out
of 15 in 6r1q
Go back to
Argon Binding Sites List in 6r1q
Argon binding site 5 out
of 15 in the Murine Neuroglobin Under 2 Kbar of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 5 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ar207
b:32.9
occ:0.75
|
CG1
|
A:VAL109
|
3.5
|
24.7
|
1.0
|
AR
|
A:AR208
|
3.7
|
40.7
|
0.7
|
CD1
|
A:ILE72
|
3.7
|
32.3
|
1.0
|
CG1
|
A:VAL68
|
3.9
|
30.7
|
1.0
|
CD1
|
A:LEU27
|
4.0
|
24.6
|
1.0
|
CMC
|
A:HEM202
|
4.1
|
32.9
|
1.0
|
CD2
|
A:LEU113
|
4.2
|
25.4
|
1.0
|
CB
|
A:LEU113
|
4.2
|
23.6
|
1.0
|
AR
|
A:AR204
|
4.3
|
36.8
|
1.0
|
CG1
|
A:ILE72
|
4.3
|
28.4
|
1.0
|
CE1
|
A:TYR137
|
4.4
|
28.3
|
1.0
|
CBC
|
A:HEM202
|
4.6
|
36.5
|
1.0
|
CG
|
A:LEU113
|
4.6
|
23.0
|
1.0
|
O
|
A:VAL109
|
4.8
|
21.0
|
1.0
|
CD1
|
A:LEU113
|
4.8
|
27.5
|
1.0
|
CD2
|
A:LEU27
|
4.8
|
21.0
|
1.0
|
CD1
|
A:TYR137
|
4.9
|
29.2
|
1.0
|
CB
|
A:VAL109
|
5.0
|
23.5
|
1.0
|
|
Argon binding site 6 out
of 15 in 6r1q
Go back to
Argon Binding Sites List in 6r1q
Argon binding site 6 out
of 15 in the Murine Neuroglobin Under 2 Kbar of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 6 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ar208
b:40.7
occ:0.65
|
CBC
|
A:HEM202
|
3.4
|
36.5
|
1.0
|
AR
|
A:AR207
|
3.7
|
32.9
|
0.8
|
CG1
|
A:ILE72
|
3.7
|
28.4
|
1.0
|
AR
|
A:AR215
|
3.7
|
32.7
|
0.3
|
CG1
|
A:VAL140
|
3.8
|
35.5
|
1.0
|
AR
|
A:AR205
|
3.8
|
36.5
|
1.0
|
CD1
|
A:TYR137
|
4.1
|
29.2
|
1.0
|
CE1
|
A:TYR137
|
4.1
|
28.3
|
1.0
|
CB
|
A:VAL140
|
4.4
|
33.5
|
1.0
|
CG2
|
A:VAL140
|
4.5
|
29.3
|
1.0
|
CD1
|
A:ILE72
|
4.5
|
32.3
|
1.0
|
CAC
|
A:HEM202
|
4.7
|
26.9
|
1.0
|
CB
|
A:ILE72
|
4.8
|
27.6
|
1.0
|
CMC
|
A:HEM202
|
4.8
|
32.9
|
1.0
|
CA
|
A:ILE72
|
4.9
|
25.4
|
1.0
|
CG1
|
A:VAL71
|
4.9
|
31.9
|
1.0
|
|
Argon binding site 7 out
of 15 in 6r1q
Go back to
Argon Binding Sites List in 6r1q
Argon binding site 7 out
of 15 in the Murine Neuroglobin Under 2 Kbar of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 7 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ar209
b:30.9
occ:0.50
|
CB
|
A:TYR137
|
3.2
|
28.6
|
1.0
|
CD2
|
A:LEU114
|
3.5
|
26.6
|
1.0
|
O
|
A:GLY110
|
3.5
|
21.9
|
1.0
|
CG
|
A:TYR137
|
3.6
|
30.0
|
1.0
|
CG
|
A:LEU114
|
3.6
|
27.8
|
1.0
|
O
|
A:TRP133
|
3.7
|
29.2
|
1.0
|
CA
|
A:SER134
|
4.0
|
31.2
|
1.0
|
CD2
|
A:TYR137
|
4.0
|
28.1
|
1.0
|
C
|
A:TRP133
|
4.0
|
28.6
|
1.0
|
CD2
|
A:LEU113
|
4.0
|
25.4
|
1.0
|
CA
|
A:GLY110
|
4.1
|
22.4
|
1.0
|
CD1
|
A:LEU114
|
4.1
|
31.9
|
1.0
|
N
|
A:SER134
|
4.1
|
32.1
|
1.0
|
C
|
A:GLY110
|
4.2
|
21.4
|
1.0
|
CD1
|
A:TYR137
|
4.4
|
29.2
|
1.0
|
CG
|
A:LEU113
|
4.4
|
23.0
|
1.0
|
CB
|
A:TRP133
|
4.5
|
28.7
|
1.0
|
CB
|
A:LEU113
|
4.6
|
23.6
|
1.0
|
CA
|
A:TYR137
|
4.7
|
26.7
|
1.0
|
N
|
A:LEU114
|
4.8
|
23.3
|
1.0
|
OG
|
A:SER134
|
4.8
|
53.3
|
1.0
|
CB
|
A:SER134
|
4.8
|
37.0
|
1.0
|
CB
|
A:LEU114
|
4.9
|
25.8
|
1.0
|
C
|
A:SER134
|
4.9
|
32.9
|
1.0
|
CA
|
A:TRP133
|
4.9
|
32.4
|
1.0
|
CE2
|
A:TYR137
|
4.9
|
27.0
|
1.0
|
O
|
A:SER134
|
5.0
|
32.3
|
1.0
|
|
Argon binding site 8 out
of 15 in 6r1q
Go back to
Argon Binding Sites List in 6r1q
Argon binding site 8 out
of 15 in the Murine Neuroglobin Under 2 Kbar of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 8 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ar210
b:36.6
occ:0.50
|
O
|
A:LYS67
|
3.7
|
29.7
|
1.0
|
CB
|
A:LEU70
|
3.7
|
39.5
|
1.0
|
AR
|
A:AR212
|
3.8
|
38.2
|
0.4
|
CA
|
A:LYS67
|
3.9
|
27.3
|
1.0
|
CMD
|
A:HEM202
|
4.0
|
26.4
|
1.0
|
CD2
|
A:LEU70
|
4.1
|
67.4
|
1.0
|
CG2
|
A:VAL71
|
4.1
|
33.6
|
1.0
|
CB
|
A:LYS67
|
4.2
|
28.8
|
1.0
|
C
|
A:LYS67
|
4.2
|
30.8
|
1.0
|
CG
|
A:LEU70
|
4.3
|
58.5
|
1.0
|
OH
|
A:TYR88
|
4.4
|
39.2
|
1.0
|
O
|
A:HOH314
|
4.5
|
48.4
|
1.0
|
CG
|
A:LYS67
|
4.5
|
31.7
|
1.0
|
N
|
A:VAL71
|
4.6
|
26.8
|
1.0
|
CA
|
A:LEU70
|
4.9
|
32.4
|
1.0
|
C
|
A:LEU70
|
4.9
|
30.0
|
1.0
|
|
Argon binding site 9 out
of 15 in 6r1q
Go back to
Argon Binding Sites List in 6r1q
Argon binding site 9 out
of 15 in the Murine Neuroglobin Under 2 Kbar of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 9 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ar211
b:39.1
occ:0.50
|
CG
|
A:LYS95
|
2.7
|
56.3
|
1.0
|
O
|
A:LYS95
|
3.2
|
34.7
|
1.0
|
C
|
A:LYS95
|
3.3
|
35.0
|
1.0
|
CG1
|
A:VAL99
|
3.4
|
61.0
|
1.0
|
C1A
|
A:HEM202
|
3.4
|
23.6
|
1.0
|
CB
|
A:LYS95
|
3.4
|
43.3
|
1.0
|
C2A
|
A:HEM202
|
3.5
|
26.6
|
1.0
|
N
|
A:HIS96
|
3.6
|
34.1
|
1.0
|
CG
|
A:HIS96
|
3.6
|
32.9
|
1.0
|
CD2
|
A:HIS96
|
3.6
|
31.2
|
1.0
|
NZ
|
A:LYS95
|
3.6
|
65.7
|
1.0
|
ND1
|
A:HIS96
|
3.7
|
29.7
|
1.0
|
NE2
|
A:HIS96
|
3.7
|
28.3
|
1.0
|
CHA
|
A:HEM202
|
3.7
|
24.0
|
1.0
|
CE1
|
A:HIS96
|
3.8
|
29.1
|
1.0
|
CA
|
A:HIS96
|
3.8
|
39.5
|
1.0
|
NA
|
A:HEM202
|
3.8
|
22.9
|
1.0
|
CG2
|
A:VAL99
|
3.9
|
54.4
|
1.0
|
CD
|
A:LYS95
|
3.9
|
62.6
|
1.0
|
C3A
|
A:HEM202
|
3.9
|
25.0
|
1.0
|
CA
|
A:LYS95
|
4.0
|
45.1
|
1.0
|
CAA
|
A:HEM202
|
4.0
|
27.4
|
1.0
|
CE
|
A:LYS95
|
4.1
|
65.4
|
1.0
|
C4A
|
A:HEM202
|
4.1
|
25.7
|
1.0
|
CB
|
A:VAL99
|
4.3
|
55.8
|
1.0
|
CB
|
A:HIS96
|
4.3
|
34.9
|
1.0
|
C4D
|
A:HEM202
|
4.4
|
25.4
|
1.0
|
CMA
|
A:HEM202
|
4.8
|
28.7
|
1.0
|
FE
|
A:HEM202
|
4.9
|
26.0
|
1.0
|
ND
|
A:HEM202
|
4.9
|
24.3
|
1.0
|
O
|
A:LEU92
|
5.0
|
36.1
|
1.0
|
|
Argon binding site 10 out
of 15 in 6r1q
Go back to
Argon Binding Sites List in 6r1q
Argon binding site 10 out
of 15 in the Murine Neuroglobin Under 2 Kbar of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 10 of Murine Neuroglobin Under 2 Kbar of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ar212
b:38.2
occ:0.40
|
AR
|
A:AR210
|
3.8
|
36.6
|
0.5
|
CG2
|
A:VAL71
|
3.9
|
33.6
|
1.0
|
CA
|
A:VAL71
|
4.0
|
29.4
|
1.0
|
O
|
A:LEU70
|
4.1
|
34.0
|
1.0
|
N
|
A:VAL71
|
4.1
|
26.8
|
1.0
|
C
|
A:LEU70
|
4.2
|
30.0
|
1.0
|
CB
|
A:ALA74
|
4.2
|
32.7
|
1.0
|
OH
|
A:TYR88
|
4.2
|
39.2
|
1.0
|
O
|
A:HOH343
|
4.2
|
36.5
|
1.0
|
CE2
|
A:TYR88
|
4.3
|
46.0
|
1.0
|
CZ
|
A:TYR88
|
4.4
|
46.5
|
1.0
|
CB
|
A:VAL71
|
4.5
|
28.9
|
1.0
|
CB
|
A:LEU70
|
4.8
|
39.5
|
1.0
|
|
Reference:
T.Prange,
N.Colloc'h,
P.Carpentier,
P.Van Linden.
Argon-Labelling Protein Crystals By High Pressure Cooling at 2000 Bar To Be Published.
Page generated: Wed Jul 10 10:50:05 2024
|