Argon in PDB 7pwn: Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon
Enzymatic activity of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon
All present enzymatic activity of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon:
1.7.3.3;
Protein crystallography data
The structure of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon, PDB code: 7pwn
was solved by
T.Prange,
N.Colloc'h,
P.Carpentier,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.63 /
1.64
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.429,
95.177,
104.398,
90,
90,
90
|
R / Rfree (%)
|
17.6 /
20.9
|
Other elements in 7pwn:
The structure of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon also contains other interesting chemical elements:
Argon Binding Sites:
The binding sites of Argon atom in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon
(pdb code 7pwn). This binding sites where shown within
5.0 Angstroms radius around Argon atom.
In total 4 binding sites of Argon where determined in the
Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon, PDB code: 7pwn:
Jump to Argon binding site number:
1;
2;
3;
4;
Argon binding site 1 out
of 4 in 7pwn
Go back to
Argon Binding Sites List in 7pwn
Argon binding site 1 out
of 4 in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 1 of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ar1103
b:25.1
occ:0.70
|
CG2
|
A:THR230
|
3.6
|
20.7
|
1.0
|
CD1
|
A:LEU252
|
3.7
|
16.2
|
1.0
|
CB
|
A:THR230
|
3.9
|
19.1
|
1.0
|
CD1
|
A:PHE219
|
4.1
|
16.8
|
1.0
|
CD2
|
A:LEU178
|
4.2
|
18.3
|
1.0
|
CE
|
A:MET234
|
4.2
|
20.3
|
1.0
|
O
|
A:VAL227
|
4.2
|
16.5
|
1.0
|
CG1
|
A:VAL227
|
4.3
|
15.3
|
1.0
|
CA
|
A:VAL227
|
4.4
|
16.2
|
1.0
|
N
|
A:MET231
|
4.5
|
17.6
|
1.0
|
CE1
|
A:PHE219
|
4.5
|
16.9
|
1.0
|
C
|
A:THR230
|
4.8
|
17.7
|
1.0
|
CB
|
A:VAL227
|
4.8
|
15.4
|
1.0
|
OG1
|
A:THR230
|
4.8
|
17.9
|
1.0
|
C
|
A:VAL227
|
4.8
|
14.7
|
1.0
|
CG2
|
A:THR180
|
4.9
|
14.9
|
1.0
|
CA
|
A:THR230
|
4.9
|
17.8
|
1.0
|
CG2
|
A:VAL227
|
4.9
|
17.0
|
1.0
|
CA
|
A:MET231
|
5.0
|
19.0
|
1.0
|
CG
|
A:LEU178
|
5.0
|
14.7
|
1.0
|
|
Argon binding site 2 out
of 4 in 7pwn
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Argon Binding Sites List in 7pwn
Argon binding site 2 out
of 4 in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 2 of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ar1104
b:20.8
occ:0.50
|
CG
|
A:MET32
|
3.1
|
17.2
|
0.5
|
O
|
A:TYR30
|
3.3
|
18.8
|
1.0
|
O
|
A:VAL15
|
3.4
|
14.3
|
1.0
|
CE
|
A:MET32
|
3.4
|
17.5
|
0.5
|
N
|
A:LYS17
|
3.6
|
15.2
|
1.0
|
C
|
A:TYR30
|
3.6
|
16.0
|
1.0
|
SD
|
A:MET32
|
3.7
|
17.5
|
0.5
|
CB
|
A:TYR30
|
3.7
|
16.9
|
1.0
|
CG1
|
A:VAL15
|
3.8
|
16.1
|
1.0
|
CG
|
A:MET32
|
3.8
|
12.2
|
0.5
|
C
|
A:VAL15
|
3.9
|
13.1
|
1.0
|
C
|
A:TYR16
|
3.9
|
14.0
|
1.0
|
CG2
|
A:VAL73
|
3.9
|
17.6
|
1.0
|
CB
|
A:LYS17
|
4.0
|
15.3
|
1.0
|
CA
|
A:TYR16
|
4.0
|
13.9
|
1.0
|
N
|
A:GLU31
|
4.1
|
15.5
|
1.0
|
CA
|
A:GLU31
|
4.1
|
14.3
|
1.0
|
CB
|
A:VAL73
|
4.1
|
16.0
|
1.0
|
N
|
A:TYR16
|
4.2
|
13.3
|
1.0
|
CG1
|
A:VAL73
|
4.2
|
16.9
|
1.0
|
CB
|
A:VAL15
|
4.2
|
13.1
|
1.0
|
N
|
A:MET32
|
4.2
|
14.1
|
1.0
|
SD
|
A:MET32
|
4.2
|
13.7
|
0.5
|
CA
|
A:TYR30
|
4.3
|
17.1
|
1.0
|
C
|
A:GLU31
|
4.4
|
14.2
|
1.0
|
CA
|
A:LYS17
|
4.4
|
15.6
|
1.0
|
CE
|
A:MET32
|
4.4
|
16.3
|
0.5
|
O
|
A:HOH1259
|
4.5
|
45.1
|
1.0
|
CB
|
A:MET32
|
4.5
|
13.3
|
0.5
|
CB
|
A:MET32
|
4.5
|
15.9
|
0.5
|
O
|
A:TYR16
|
4.6
|
14.4
|
1.0
|
CA
|
A:VAL15
|
4.7
|
12.6
|
1.0
|
CA
|
A:MET32
|
5.0
|
13.7
|
0.5
|
|
Argon binding site 3 out
of 4 in 7pwn
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Argon Binding Sites List in 7pwn
Argon binding site 3 out
of 4 in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 3 of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ar1103
b:22.4
occ:0.75
|
CG2
|
B:THR230
|
3.6
|
14.2
|
1.0
|
CD1
|
B:LEU252
|
3.7
|
13.5
|
1.0
|
CB
|
B:THR230
|
3.9
|
14.5
|
1.0
|
CD2
|
B:LEU178
|
4.1
|
15.7
|
1.0
|
CD1
|
B:PHE219
|
4.1
|
13.2
|
1.0
|
CG1
|
B:VAL227
|
4.2
|
12.9
|
1.0
|
O
|
B:VAL227
|
4.2
|
11.9
|
1.0
|
CE
|
B:MET234
|
4.3
|
16.1
|
1.0
|
CA
|
B:VAL227
|
4.4
|
12.2
|
1.0
|
N
|
B:MET231
|
4.5
|
14.2
|
1.0
|
CE1
|
B:PHE219
|
4.5
|
12.1
|
1.0
|
CB
|
B:VAL227
|
4.8
|
11.9
|
1.0
|
C
|
B:THR230
|
4.8
|
14.8
|
1.0
|
OG1
|
B:THR230
|
4.8
|
15.2
|
1.0
|
C
|
B:VAL227
|
4.8
|
11.6
|
1.0
|
CG2
|
B:THR180
|
4.9
|
11.8
|
1.0
|
CA
|
B:THR230
|
4.9
|
14.1
|
1.0
|
CG2
|
B:VAL227
|
4.9
|
12.9
|
1.0
|
CG
|
B:LEU178
|
5.0
|
13.6
|
1.0
|
CA
|
B:MET231
|
5.0
|
15.1
|
1.0
|
CB
|
B:MET231
|
5.0
|
15.3
|
1.0
|
|
Argon binding site 4 out
of 4 in 7pwn
Go back to
Argon Binding Sites List in 7pwn
Argon binding site 4 out
of 4 in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon
Mono view
Stereo pair view
|
A full contact list of Argon with other atoms in the Ar binding
site number 4 of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ar1104
b:19.6
occ:0.50
|
O
|
B:TYR30
|
3.4
|
15.7
|
1.0
|
O
|
B:VAL15
|
3.4
|
13.0
|
1.0
|
CE
|
B:MET32
|
3.5
|
12.3
|
0.5
|
N
|
B:LYS17
|
3.6
|
13.3
|
1.0
|
CG
|
B:MET32
|
3.6
|
13.2
|
0.5
|
CG
|
B:MET32
|
3.6
|
16.6
|
0.5
|
C
|
B:TYR30
|
3.7
|
15.8
|
1.0
|
CG1
|
B:VAL15
|
3.8
|
14.9
|
1.0
|
CB
|
B:TYR30
|
3.8
|
18.1
|
1.0
|
C
|
B:VAL15
|
3.9
|
11.4
|
1.0
|
CG2
|
B:VAL73
|
3.9
|
15.8
|
1.0
|
SD
|
B:MET32
|
3.9
|
12.9
|
0.5
|
C
|
B:TYR16
|
3.9
|
12.4
|
1.0
|
CA
|
B:TYR16
|
4.0
|
12.6
|
1.0
|
CB
|
B:LYS17
|
4.0
|
14.4
|
1.0
|
SD
|
B:MET32
|
4.1
|
18.4
|
0.5
|
N
|
B:GLU31
|
4.1
|
14.9
|
1.0
|
O
|
B:HOH1413
|
4.1
|
43.4
|
1.0
|
CB
|
B:VAL73
|
4.1
|
16.7
|
1.0
|
N
|
B:TYR16
|
4.1
|
11.8
|
1.0
|
CB
|
B:VAL15
|
4.1
|
12.2
|
1.0
|
CA
|
B:GLU31
|
4.1
|
13.6
|
1.0
|
CE
|
B:MET32
|
4.2
|
20.7
|
0.5
|
N
|
B:MET32
|
4.2
|
13.8
|
0.5
|
CG1
|
B:VAL73
|
4.2
|
17.6
|
1.0
|
N
|
B:MET32
|
4.2
|
13.3
|
0.5
|
CB
|
B:MET32
|
4.4
|
15.1
|
0.5
|
C
|
B:GLU31
|
4.4
|
12.9
|
1.0
|
CA
|
B:LYS17
|
4.4
|
15.2
|
1.0
|
CA
|
B:TYR30
|
4.4
|
16.1
|
1.0
|
O
|
B:TYR16
|
4.6
|
12.3
|
1.0
|
CB
|
B:MET32
|
4.6
|
13.4
|
0.5
|
CA
|
B:VAL15
|
4.6
|
12.2
|
1.0
|
CA
|
B:MET32
|
4.9
|
14.0
|
0.5
|
|
Reference:
T.Prange,
P.Carpentier,
A.C.Dhaussy,
E.Girard,
N.Colloc'h.
Comparative Study of the Effects of High Hydrostatic Pressure Per Se and High Argon Pressure on Urate Oxidase Ligand Stabilization Acta Cryst. D V. 78 162 2022.
DOI: 10.1107/S2059798321012134
Page generated: Wed Jul 10 10:50:49 2024
|