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Argon in PDB 7pwn: Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon

Enzymatic activity of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon

All present enzymatic activity of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon:
1.7.3.3;

Protein crystallography data

The structure of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon, PDB code: 7pwn was solved by T.Prange, N.Colloc'h, P.Carpentier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.63 / 1.64
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.429, 95.177, 104.398, 90, 90, 90
R / Rfree (%) 17.6 / 20.9

Other elements in 7pwn:

The structure of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Argon Binding Sites:

The binding sites of Argon atom in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon (pdb code 7pwn). This binding sites where shown within 5.0 Angstroms radius around Argon atom.
In total 4 binding sites of Argon where determined in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon, PDB code: 7pwn:
Jump to Argon binding site number: 1; 2; 3; 4;

Argon binding site 1 out of 4 in 7pwn

Go back to Argon Binding Sites List in 7pwn
Argon binding site 1 out of 4 in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 1 of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar1103

b:25.1
occ:0.70
CG2 A:THR230 3.6 20.7 1.0
CD1 A:LEU252 3.7 16.2 1.0
CB A:THR230 3.9 19.1 1.0
CD1 A:PHE219 4.1 16.8 1.0
CD2 A:LEU178 4.2 18.3 1.0
CE A:MET234 4.2 20.3 1.0
O A:VAL227 4.2 16.5 1.0
CG1 A:VAL227 4.3 15.3 1.0
CA A:VAL227 4.4 16.2 1.0
N A:MET231 4.5 17.6 1.0
CE1 A:PHE219 4.5 16.9 1.0
C A:THR230 4.8 17.7 1.0
CB A:VAL227 4.8 15.4 1.0
OG1 A:THR230 4.8 17.9 1.0
C A:VAL227 4.8 14.7 1.0
CG2 A:THR180 4.9 14.9 1.0
CA A:THR230 4.9 17.8 1.0
CG2 A:VAL227 4.9 17.0 1.0
CA A:MET231 5.0 19.0 1.0
CG A:LEU178 5.0 14.7 1.0

Argon binding site 2 out of 4 in 7pwn

Go back to Argon Binding Sites List in 7pwn
Argon binding site 2 out of 4 in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 2 of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar1104

b:20.8
occ:0.50
CG A:MET32 3.1 17.2 0.5
O A:TYR30 3.3 18.8 1.0
O A:VAL15 3.4 14.3 1.0
CE A:MET32 3.4 17.5 0.5
N A:LYS17 3.6 15.2 1.0
C A:TYR30 3.6 16.0 1.0
SD A:MET32 3.7 17.5 0.5
CB A:TYR30 3.7 16.9 1.0
CG1 A:VAL15 3.8 16.1 1.0
CG A:MET32 3.8 12.2 0.5
C A:VAL15 3.9 13.1 1.0
C A:TYR16 3.9 14.0 1.0
CG2 A:VAL73 3.9 17.6 1.0
CB A:LYS17 4.0 15.3 1.0
CA A:TYR16 4.0 13.9 1.0
N A:GLU31 4.1 15.5 1.0
CA A:GLU31 4.1 14.3 1.0
CB A:VAL73 4.1 16.0 1.0
N A:TYR16 4.2 13.3 1.0
CG1 A:VAL73 4.2 16.9 1.0
CB A:VAL15 4.2 13.1 1.0
N A:MET32 4.2 14.1 1.0
SD A:MET32 4.2 13.7 0.5
CA A:TYR30 4.3 17.1 1.0
C A:GLU31 4.4 14.2 1.0
CA A:LYS17 4.4 15.6 1.0
CE A:MET32 4.4 16.3 0.5
O A:HOH1259 4.5 45.1 1.0
CB A:MET32 4.5 13.3 0.5
CB A:MET32 4.5 15.9 0.5
O A:TYR16 4.6 14.4 1.0
CA A:VAL15 4.7 12.6 1.0
CA A:MET32 5.0 13.7 0.5

Argon binding site 3 out of 4 in 7pwn

Go back to Argon Binding Sites List in 7pwn
Argon binding site 3 out of 4 in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 3 of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ar1103

b:22.4
occ:0.75
CG2 B:THR230 3.6 14.2 1.0
CD1 B:LEU252 3.7 13.5 1.0
CB B:THR230 3.9 14.5 1.0
CD2 B:LEU178 4.1 15.7 1.0
CD1 B:PHE219 4.1 13.2 1.0
CG1 B:VAL227 4.2 12.9 1.0
O B:VAL227 4.2 11.9 1.0
CE B:MET234 4.3 16.1 1.0
CA B:VAL227 4.4 12.2 1.0
N B:MET231 4.5 14.2 1.0
CE1 B:PHE219 4.5 12.1 1.0
CB B:VAL227 4.8 11.9 1.0
C B:THR230 4.8 14.8 1.0
OG1 B:THR230 4.8 15.2 1.0
C B:VAL227 4.8 11.6 1.0
CG2 B:THR180 4.9 11.8 1.0
CA B:THR230 4.9 14.1 1.0
CG2 B:VAL227 4.9 12.9 1.0
CG B:LEU178 5.0 13.6 1.0
CA B:MET231 5.0 15.1 1.0
CB B:MET231 5.0 15.3 1.0

Argon binding site 4 out of 4 in 7pwn

Go back to Argon Binding Sites List in 7pwn
Argon binding site 4 out of 4 in the Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 4 of Urate Oxydase Aza-Xanthine Complex at 1000 Bars (100 Mpa) of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ar1104

b:19.6
occ:0.50
O B:TYR30 3.4 15.7 1.0
O B:VAL15 3.4 13.0 1.0
CE B:MET32 3.5 12.3 0.5
N B:LYS17 3.6 13.3 1.0
CG B:MET32 3.6 13.2 0.5
CG B:MET32 3.6 16.6 0.5
C B:TYR30 3.7 15.8 1.0
CG1 B:VAL15 3.8 14.9 1.0
CB B:TYR30 3.8 18.1 1.0
C B:VAL15 3.9 11.4 1.0
CG2 B:VAL73 3.9 15.8 1.0
SD B:MET32 3.9 12.9 0.5
C B:TYR16 3.9 12.4 1.0
CA B:TYR16 4.0 12.6 1.0
CB B:LYS17 4.0 14.4 1.0
SD B:MET32 4.1 18.4 0.5
N B:GLU31 4.1 14.9 1.0
O B:HOH1413 4.1 43.4 1.0
CB B:VAL73 4.1 16.7 1.0
N B:TYR16 4.1 11.8 1.0
CB B:VAL15 4.1 12.2 1.0
CA B:GLU31 4.1 13.6 1.0
CE B:MET32 4.2 20.7 0.5
N B:MET32 4.2 13.8 0.5
CG1 B:VAL73 4.2 17.6 1.0
N B:MET32 4.2 13.3 0.5
CB B:MET32 4.4 15.1 0.5
C B:GLU31 4.4 12.9 1.0
CA B:LYS17 4.4 15.2 1.0
CA B:TYR30 4.4 16.1 1.0
O B:TYR16 4.6 12.3 1.0
CB B:MET32 4.6 13.4 0.5
CA B:VAL15 4.6 12.2 1.0
CA B:MET32 4.9 14.0 0.5

Reference:

T.Prange, P.Carpentier, A.C.Dhaussy, E.Girard, N.Colloc'h. Comparative Study of the Effects of High Hydrostatic Pressure Per Se and High Argon Pressure on Urate Oxidase Ligand Stabilization Acta Cryst. D V. 78 162 2022.
DOI: 10.1107/S2059798321012134
Page generated: Wed Jul 10 10:50:49 2024

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