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Argon in PDB 7q09: Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon

Enzymatic activity of Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon

All present enzymatic activity of Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon:
1.7.3.3;

Protein crystallography data

The structure of Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon, PDB code: 7q09 was solved by T.Prange, N.Colloc'h, P.Carpentier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.71 / 2.19
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.4, 95.338, 104.662, 90, 90, 90
R / Rfree (%) 17.2 / 22.7

Other elements in 7q09:

The structure of Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Argon Binding Sites:

The binding sites of Argon atom in the Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon (pdb code 7q09). This binding sites where shown within 5.0 Angstroms radius around Argon atom.
In total 6 binding sites of Argon where determined in the Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon, PDB code: 7q09:
Jump to Argon binding site number: 1; 2; 3; 4; 5; 6;

Argon binding site 1 out of 6 in 7q09

Go back to Argon Binding Sites List in 7q09
Argon binding site 1 out of 6 in the Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 1 of Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar305

b:32.8
occ:0.70
 AR A:AR305 0.0 32.8 0.7
CG2 A:THR230 3.8 28.2 1.0
CD1 A:LEU252 3.9 38.0 1.0
AR A:AR305 3.9 15.3 0.3
CB A:THR230 4.0 28.1 1.0
CD1 A:PHE219 4.1 23.2 1.0
CD2 A:LEU178 4.1 26.1 1.0
CG1 A:VAL227 4.2 20.2 1.0
O A:VAL227 4.3 23.6 1.0
CA A:VAL227 4.4 22.9 1.0
CE A:MET234 4.5 32.3 1.0
CE1 A:PHE219 4.5 24.1 1.0
N A:MET231 4.5 27.5 1.0
O A:HOH561 4.6 19.9 1.0
CB A:VAL227 4.7 20.1 1.0
CG2 A:VAL227 4.9 19.5 1.0
C A:VAL227 4.9 21.8 1.0
C A:THR230 4.9 28.8 1.0
CG A:LEU178 4.9 25.8 1.0
OG1 A:THR230 4.9 28.6 1.0
CG2 A:THR180 5.0 24.9 1.0
CA A:THR230 5.0 31.2 1.0

Argon binding site 2 out of 6 in 7q09

Go back to Argon Binding Sites List in 7q09
Argon binding site 2 out of 6 in the Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 2 of Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar305

b:15.3
occ:0.30
 AR A:AR305 0.0 15.3 0.3
CG2 A:VAL182 3.1 20.7 1.0
CE A:MET234 3.3 32.3 1.0
CD1 A:PHE219 3.5 23.2 1.0
CG2 A:THR180 3.6 24.9 1.0
AR A:AR305 3.9 32.8 0.7
CG A:PHE219 4.0 22.6 1.0
CB A:PHE219 4.0 23.8 1.0
CG2 A:THR215 4.0 30.5 1.0
SD A:MET234 4.1 29.3 1.0
CG2 A:VAL151 4.3 26.3 1.0
CE1 A:PHE219 4.3 24.1 1.0
CD1 A:LEU252 4.4 38.0 1.0
CB A:VAL182 4.5 19.9 1.0
CD2 A:LEU252 4.6 34.5 1.0
O A:THR215 4.7 23.6 1.0
CG1 A:VAL182 4.8 22.7 1.0

Argon binding site 3 out of 6 in 7q09

Go back to Argon Binding Sites List in 7q09
Argon binding site 3 out of 6 in the Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 3 of Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ar306

b:27.3
occ:0.80
 CE A:MET32 3.3 26.2 0.5
O A:TYR30 3.4 26.3 1.0
N A:LYS17 3.5 23.3 1.0
CG A:MET32 3.6 25.2 0.5
O A:VAL15 3.6 23.3 1.0
CG A:MET32 3.6 25.0 0.5
C A:TYR30 3.6 23.0 1.0
CB A:TYR30 3.9 28.2 1.0
CG2 A:VAL73 3.9 25.4 1.0
C A:VAL15 3.9 23.6 1.0
C A:TYR16 3.9 23.9 1.0
CB A:VAL73 4.0 24.2 1.0
CA A:TYR16 4.0 25.2 1.0
CB A:LYS17 4.0 24.9 1.0
CG1 A:VAL73 4.0 23.1 1.0
SD A:MET32 4.0 25.7 0.5
CG1 A:VAL15 4.0 23.0 1.0
N A:TYR16 4.1 23.2 1.0
N A:GLU31 4.1 24.0 1.0
SD A:MET32 4.1 26.0 0.5
CE A:MET32 4.2 24.5 0.5
CB A:VAL15 4.2 21.9 1.0
CA A:GLU31 4.2 22.6 1.0
N A:MET32 4.4 22.6 1.0
CA A:TYR30 4.4 24.9 1.0
CA A:LYS17 4.4 26.3 1.0
C A:GLU31 4.5 22.9 1.0
CB A:MET32 4.6 23.8 0.5
CA A:VAL15 4.7 23.8 1.0
O A:TYR16 4.7 24.3 1.0
CB A:MET32 4.8 23.8 0.5

Argon binding site 4 out of 6 in 7q09

Go back to Argon Binding Sites List in 7q09
Argon binding site 4 out of 6 in the Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 4 of Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ar305

b:23.1
occ:0.60
 AR B:AR305 0.0 23.1 0.6
CG2 B:THR230 3.6 28.3 1.0
AR B:AR305 3.8 40.8 0.3
CB B:THR230 3.9 30.0 1.0
CD1 B:LEU252 3.9 27.8 1.0
CD2 B:LEU178 4.0 25.6 1.0
CD1 B:PHE219 4.0 25.6 1.0
CG1 B:VAL227 4.2 25.1 1.0
O B:VAL227 4.3 23.1 1.0
CA B:VAL227 4.4 25.6 1.0
CE B:MET234 4.4 27.5 1.0
CE1 B:PHE219 4.5 26.7 1.0
N B:MET231 4.6 28.2 1.0
O B:HOH593 4.7 27.1 1.0
CB B:VAL227 4.8 24.0 1.0
OG1 B:THR230 4.8 28.5 1.0
C B:THR230 4.8 29.7 1.0
CG B:LEU178 4.9 26.6 1.0
C B:VAL227 4.9 21.5 1.0
CA B:THR230 4.9 30.7 1.0

Argon binding site 5 out of 6 in 7q09

Go back to Argon Binding Sites List in 7q09
Argon binding site 5 out of 6 in the Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 5 of Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ar305

b:40.8
occ:0.30
 AR B:AR305 0.0 40.8 0.3
CE B:MET234 3.2 27.5 1.0
CG2 B:VAL182 3.4 20.3 1.0
CD1 B:PHE219 3.5 25.6 1.0
CG2 B:THR180 3.7 21.2 1.0
AR B:AR305 3.8 23.1 0.6
CB B:PHE219 3.9 25.5 1.0
CG B:PHE219 4.0 24.1 1.0
CG2 B:THR215 4.1 30.7 1.0
SD B:MET234 4.1 31.4 1.0
CG2 B:VAL151 4.3 22.2 1.0
CE1 B:PHE219 4.4 26.7 1.0
CD1 B:LEU252 4.4 27.8 1.0
O B:THR215 4.6 23.0 1.0
CD2 B:LEU252 4.6 24.0 1.0
CB B:VAL182 4.7 20.4 1.0
CG1 B:VAL182 4.9 22.8 1.0

Argon binding site 6 out of 6 in 7q09

Go back to Argon Binding Sites List in 7q09
Argon binding site 6 out of 6 in the Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 6 of Urate Oxidase Aza-Xanthine Complex Under 1500 Bar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ar306

b:27.9
occ:0.85
 O B:TYR30 3.2 29.3 1.0
SD B:MET32 3.5 31.0 0.5
CG B:MET32 3.5 27.8 0.5
CE B:MET32 3.6 28.7 0.5
C B:TYR30 3.6 28.5 1.0
O B:VAL15 3.6 20.6 1.0
N B:LYS17 3.7 24.7 1.0
CB B:TYR30 3.7 31.3 1.0
CG2 B:VAL73 3.8 31.8 1.0
CG B:MET32 3.9 24.0 0.5
C B:VAL15 3.9 20.1 1.0
CB B:VAL73 4.0 31.1 1.0
C B:TYR16 4.0 24.0 1.0
CB B:LYS17 4.0 25.2 1.0
CA B:TYR16 4.1 21.7 1.0
N B:GLU31 4.1 26.4 1.0
CG1 B:VAL73 4.1 28.8 1.0
CA B:GLU31 4.2 24.6 1.0
N B:TYR16 4.2 22.9 1.0
CG1 B:VAL15 4.2 19.2 1.0
CB B:VAL15 4.3 19.0 1.0
N B:MET32 4.3 23.8 0.5
CA B:TYR30 4.3 27.7 1.0
CE B:MET32 4.3 22.6 0.5
SD B:MET32 4.3 24.1 0.5
N B:MET32 4.4 24.8 0.5
C B:GLU31 4.4 24.2 1.0
CA B:LYS17 4.5 25.5 1.0
CB B:MET32 4.5 22.7 0.5
CB B:MET32 4.6 25.4 0.5
CA B:VAL15 4.8 20.0 1.0
O B:TYR16 4.8 20.1 1.0
CG B:TYR30 5.0 34.5 1.0

Reference:

T.Prange, P.Carpentier, A.C.Dhaussy, E.Girard, N.Colloc'h. Comparative Study of the Effects of High Hydrostatic Pressure Per Se and High Argon Pressure on Urate Oxidase Ligand Stabilization Acta Cryst. D V. 78 162 2022.
DOI: 10.1107/S2059798321012134
Page generated: Wed Jul 10 10:50:50 2024

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