Argon in PDB 7q38: Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon

The structure of Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon, PDB code: 7q38 was solved by I.Melnikov, M.Rulev, R.Astashkin, K.Kovalev, P.Carpentier, V.Gordeliy, A.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	83.02 / 1.65
Space group	C 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	115.657, 119.245, 36.393, 90, 90, 90
R / Rfree (%)	16.2 / 20.5

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 47;

Binding sites:

The binding sites of Argon atom in the Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon (pdb code 7q38). This binding sites where shown within 5.0 Angstroms radius around Argon atom.
In total 47 binding sites of Argon where determined in the Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon, PDB code: 7q38:
Jump to Argon binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Argon binding site 1 out of 47 in the Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 1 of Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon within 5.0Å range: probe atom residue distance (Å) B Occ A:Ar322 b:18.7 occ:0.83 CD1 A:LEU97 3.5 21.4 1.0 CZ2 A:TRP182 3.6 18.6 1.0 OG1 A:THR178 3.7 20.4 1.0 C A:LEU93 3.7 15.8 1.0 O A:LEU93 3.7 15.7 1.0 CB A:LEU93 3.7 15.8 1.0 CG2 A:THR178 3.7 21.5 1.0 CE2 A:PHE219 3.8 19.9 1.0 CD2 A:LEU94 3.9 19.9 1.0 N A:LEU94 4.0 17.5 1.0 CZ A:PHE219 4.0 21.0 1.0 CE2 A:TRP182 4.0 16.4 1.0 CG A:LEU97 4.1 18.6 1.0 O A:HOH430 4.1 24.9 1.0 CA A:LEU94 4.2 18.6 1.0 NE1 A:TRP182 4.2 18.5 1.0 CA A:LEU93 4.3 15.9 1.0 CH2 A:TRP182 4.3 18.3 1.0 CB A:THR178 4.3 20.2 1.0 CG A:LEU94 4.5 17.2 1.0 CD2 A:PHE219 4.7 18.9 1.0 CD1 A:LEU152 4.8 21.2 1.0 CG A:LEU93 4.9 17.8 1.0 CB A:LEU94 5.0 18.1 1.0 CD2 A:LEU97 5.0 22.4 1.0

Argon binding site 2 out of 47 in the Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 2 of Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon within 5.0Å range: probe atom residue distance (Å) B Occ A:Ar323 b:19.7 occ:0.33 AR A:AR360 2.6 21.5 0.2 CA A:LEU15 3.7 18.6 1.0 C13 A:OLC312 3.8 44.8 0.8 O A:ALA14 3.8 19.4 1.0 N A:LEU15 3.9 18.5 1.0 C A:ALA14 3.9 18.5 1.0 CB A:ALA18 4.0 19.8 1.0 C15 A:OLC312 4.0 42.1 0.8 CD1 A:LEU15 4.1 21.1 1.0 AR A:AR361 4.2 31.3 0.3 C14 A:OLC312 4.2 44.1 0.8 CB A:LEU15 4.3 19.1 1.0 CB A:ALA14 4.4 22.4 1.0 CA A:ALA14 4.8 20.7 1.0 CG A:LEU15 4.9 19.4 1.0 C A:LEU15 4.9 19.4 1.0 C11 A:OLA315 4.9 49.1 1.0

Argon binding site 3 out of 47 in the Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 3 of Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon within 5.0Å range: probe atom residue distance (Å) B Occ A:Ar324 b:21.2 occ:0.63 C A:LEU94 3.5 17.0 1.0 N A:LEU95 3.6 16.6 1.0 CB A:LEU94 3.6 18.1 1.0 O A:LEU94 3.7 17.5 1.0 CA A:LEU95 3.8 18.2 1.0 CG2 A:ILE108 3.8 23.1 1.0 O A:ILE108 4.0 21.4 1.0 CB A:ALA98 4.0 20.5 1.0 CB A:LEU111 4.0 23.1 1.0 CG2 A:VAL112 4.1 24.9 1.0 CA A:ILE108 4.1 23.8 1.0 CD1 A:LEU111 4.2 29.4 1.0 CA A:LEU94 4.2 18.6 1.0 CB A:ILE108 4.3 22.8 1.0 CG1 A:ILE108 4.4 24.2 1.0 O A:PRO91 4.4 18.0 1.0 CB A:LEU95 4.4 19.1 1.0 C A:ILE108 4.5 23.0 1.0 CD1 A:LEU95 4.7 23.5 1.0 N A:VAL112 4.8 19.2 1.0 CG A:LEU111 4.8 26.6 1.0 CG A:LEU94 4.9 17.2 1.0

Argon binding site 4 out of 47 in the Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 4 of Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon within 5.0Å range: probe atom residue distance (Å) B Occ A:Ar325 b:21.6 occ:0.30 C4 A:LFA307 3.4 46.0 0.9 CB A:ALA114 3.6 20.4 1.0 CA A:ALA114 3.8 19.4 1.0 CD1 A:ILE117 3.9 24.0 1.0 O A:HOH487 4.0 47.5 1.0 C6 A:LFA307 4.1 23.2 0.9 CD2 A:TYR147 4.2 30.4 1.0 C5 A:LFA307 4.2 38.5 0.9 CB A:ALA144 4.2 17.9 1.0 CA A:ALA144 4.3 17.2 1.0 CG A:TYR147 4.5 24.1 1.0 C3 A:LFA307 4.6 52.9 0.9 CB A:TYR147 4.7 19.0 1.0 CE2 A:TYR147 4.7 37.8 1.0 O A:ALA114 4.8 17.1 1.0 CB A:ILE117 4.8 19.4 1.0 C2 A:LFA307 4.8 57.5 0.9 C A:ALA114 4.8 16.4 1.0 N A:ALA114 4.8 18.1 1.0 CG2 A:ILE117 4.9 20.7 1.0 CG1 A:ILE117 4.9 21.3 1.0

Argon binding site 5 out of 47 in the Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 5 of Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon within 5.0Å range: probe atom residue distance (Å) B Occ A:Ar326 b:21.1 occ:0.31 O A:TYR83 3.7 19.2 1.0 CG2 A:ILE119 3.7 19.2 1.0 C8 A:LFA303 3.8 62.5 1.0 AR A:AR366 3.8 26.1 0.1 CD2 A:LEU87 3.8 27.0 1.0 CD2 A:LEU123 3.9 28.1 1.0 CB A:LEU87 3.9 19.4 1.0 C A:TYR83 3.9 19.7 1.0 CB A:TYR83 4.1 22.4 1.0 CD1 A:LEU87 4.1 24.9 1.0 CG A:LEU87 4.2 23.0 1.0 C9 A:LFA303 4.3 57.8 1.0 N A:ALA84 4.4 19.0 1.0 CB A:LEU123 4.4 21.3 1.0 O A:ILE119 4.4 19.5 1.0 CA A:TYR83 4.6 20.0 1.0 C A:ILE119 4.6 19.4 1.0 C2 A:LFA308 4.6 74.8 1.0 CA A:GLY120 4.6 20.0 1.0 CA A:ALA84 4.7 21.4 1.0 N A:GLY120 4.7 19.0 1.0 C10 A:LFA303 4.7 48.7 1.0 CB A:ILE119 4.8 20.0 1.0 CG A:LEU123 4.8 22.3 1.0 C1 A:LFA308 4.9 70.3 1.0 CA A:LEU87 5.0 17.8 1.0

Argon binding site 6 out of 47 in the Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 6 of Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon within 5.0Å range: probe atom residue distance (Å) B Occ A:Ar327 b:19.7 occ:0.39 C6 A:HEX317 3.3 50.1 1.0 CG1 A:VAL177 3.5 25.1 1.0 O A:SER214 3.5 18.4 1.0 C A:GLY218 3.6 19.2 1.0 N A:PHE219 3.7 17.5 1.0 CA A:GLY218 3.7 18.3 1.0 CD1 A:ILE222 4.0 23.0 1.0 O A:GLY218 4.1 18.3 1.0 CG2 A:VAL177 4.2 23.9 1.0 CD1 A:LEU181 4.3 19.8 1.0 C A:SER214 4.4 18.0 1.0 CB A:VAL177 4.4 21.8 1.0 CA A:PHE219 4.4 19.3 1.0 C1 A:HEX316 4.6 59.7 1.0 AR A:AR328 4.7 20.5 0.3 C5 A:HEX317 4.7 44.0 1.0 CA A:SER214 4.8 17.1 1.0 CB A:SER214 4.9 19.4 1.0 N A:GLY218 4.9 17.0 1.0

Argon binding site 7 out of 47 in the Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 7 of Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon within 5.0Å range: probe atom residue distance (Å) B Occ A:Ar328 b:20.5 occ:0.34 AR A:AR347 3.7 22.5 0.2 CG A:LEU181 3.7 18.4 1.0 CD2 A:LEU181 3.9 20.7 1.0 CA A:VAL177 4.0 18.7 1.0 AR A:AR363 4.1 20.1 0.2 CG1 A:VAL180 4.1 24.4 1.0 O A:VAL177 4.1 17.9 1.0 CD1 A:LEU181 4.2 19.8 1.0 CB A:VAL180 4.2 19.5 1.0 CG2 A:VAL177 4.2 23.9 1.0 CG1 A:VAL177 4.3 25.1 1.0 CB A:VAL177 4.4 21.8 1.0 C A:VAL177 4.6 19.2 1.0 AR A:AR327 4.7 19.7 0.4 N A:LEU181 4.8 17.0 1.0 CG2 A:VAL180 4.9 20.3 1.0

Argon binding site 8 out of 47 in the Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 8 of Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon within 5.0Å range: probe atom residue distance (Å) B Occ A:Ar329 b:24.9 occ:0.42 CG A:LEU109 1.8 31.1 0.6 CD2 A:LEU109 2.1 36.2 0.6 CD1 A:LEU109 2.7 33.3 0.6 CB A:LEU109 3.1 25.0 0.6 N A:ALA110 3.5 21.3 1.0 C A:LEU109 3.5 19.6 1.0 O A:LEU109 3.8 20.3 1.0 CA A:ALA110 3.9 21.2 1.0 CA A:LEU109 3.9 21.4 0.6 CB A:LEU109 4.2 26.8 0.4 CA A:LEU109 4.3 22.3 0.4 O A:GLY106 4.4 21.0 1.0 CB A:ALA110 4.5 24.6 1.0

Argon binding site 9 out of 47 in the Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 9 of Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon within 5.0Å range: probe atom residue distance (Å) B Occ A:Ar330 b:22.9 occ:0.23 CD1 A:LEU25 3.3 27.4 0.5 CB A:LEU28 3.7 19.9 1.0 CD1 A:LEU28 4.0 27.1 1.0 CD2 A:LEU25 4.2 25.0 0.5 CG2 A:VAL29 4.2 24.6 1.0 CG A:LEU28 4.5 23.5 1.0 O A:LEU25 4.6 20.2 1.0 N A:VAL29 4.6 21.4 1.0 C A:LEU28 4.7 20.5 1.0 CG A:LEU25 4.8 26.1 0.5 CA A:LEU28 4.9 20.0 1.0 CA A:LEU25 5.0 21.4 0.5 CA A:LEU25 5.0 20.5 0.5

Argon binding site 10 out of 47 in the Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon


Mono view


Stereo pair view

A full contact list of Argon with other atoms in the Ar binding site number 10 of Crystal Structure of the Mutant Bacteriorhodopsin Pressurized with Argon within 5.0Å range: probe atom residue distance (Å) B Occ A:Ar331 b:27.0 occ:0.40 OG A:SER59 3.4 21.0 0.5 AR A:AR344 3.7 21.4 0.2 CB A:SER59 3.7 20.0 0.5 N A:GLY65 3.7 30.6 1.0 CE A:MET56 3.8 24.8 0.5 CB A:SER59 3.8 19.8 0.5 CB A:TYR64 3.8 23.4 1.0 CA A:GLY65 3.8 32.1 1.0 CH2 A:TRP80 3.9 39.8 1.0 CB A:ALA81 4.0 25.4 1.0 C A:TYR64 4.2 30.9 1.0 OG A:SER59 4.2 21.1 0.5 CZ2 A:TRP80 4.3 38.2 1.0 C5 A:HEX318 4.4 52.8 1.0 CZ3 A:TRP80 4.4 37.4 1.0 SD A:MET56 4.6 19.9 0.5 AR A:AR356 4.6 27.6 0.2 CA A:TYR64 4.7 24.2 1.0 CE A:MET56 4.7 21.4 0.5 C3 A:HEX318 4.7 53.8 1.0 O A:TYR64 4.8 32.2 1.0 AR A:AR332 4.9 23.5 0.5 CG A:TYR64 4.9 23.6 1.0

I.Melnikov, P.Orekhov, M.Rulev, K.Kovalev, R.Astashkin, D.Bratanov, Y.Ryzhykau, T.Balandin, S.Bukhdruker, I.Okhrimenko, V.Borshchevskiy, G.Bourenkov, C.Mueller-Dieckmann, P.Van Der Linden, P.Carpentier, G.Leonard, V.Gordeliy, A.Popov. High-Pressure Crystallography Shows Noble Gas Intervention Into Protein-Lipid Interaction and Suggests A Model For Anaesthetic Action. Commun Biol V. 5 360 2022.
ISSN: ESSN 2399-3642
PubMed: 35422073
DOI: 10.1038/S42003-022-03233-Y